SNP Profiles of EQX Z View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
1._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
2._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
3._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
4._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
5._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
6._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
7._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
8._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
9._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
10._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
11._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
12._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
13._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	_	AA	CC	AA
14._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	_	AA	CC	AA
15._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
16._RUQ_109	_	AG	CC	CT	_	_	_	GG	_	_	_	_	CC	AA
17._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
18._RUQ_109	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	_	CC	AA
19._RUQ_109	_	_	CC	_	_	_	_	GG	_	CC	_	AA	_	AA
20._GC-01-055-3-10	CC	GG	CG	CT	TT	CC	CC	TT	CC	CC	AA	GG	CC	AG
21._GC-01-055-3-10	CC	GG	CG	CT	TT	CC	CC	TT	CC	CC	AA	GG	CC	AG
22._EQX_/Z_[CHA]	CC	GG	CG	CT	TT	CC	CC	TT	CC	CC	AA	GG	CC	AG
23._EQX_/Z_[CHA]	CC	GG	CG	CT	TT	CC	CC	TT	CC	CC	AA	GG	CC	AG
24._RUQ_109	AG	AG	GG	AG	AG	AA	GG	CC	_	_	AT	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
1._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
2._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
3._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
4._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
5._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
6._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
7._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
8._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
9._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
10._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
11._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
12._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
13._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
14._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
15._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
16._RUQ_109	_	_	_	_	CC	CC	GG	_	CT	CC	CG	GG	CC	AA
17._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	GG	CT	CC	CG	GG	CC	AA
18._RUQ_109	CC	AT	CG	CC	CC	CC	GG	GG	CT	CC	CG	GG	CC	AA
19._RUQ_109	_	_	_	_	_	CC	GG	GG	_	CC	CG	_	_	AA
20._GC-01-055-3-10	CT	AA	CG	TT	CC	GG	GG	AG	CT	AC	CG	GT	CT	AA
21._GC-01-055-3-10	CT	AA	CG	TT	CC	GG	GG	AG	CT	AC	CG	GT	CT	AA
22._EQX_/Z_[CHA]	CT	AA	CG	TT	CC	GG	GG	AG	CT	AC	CG	GT	CT	AA
23._EQX_/Z_[CHA]	CT	AA	CG	TT	CC	GG	GG	AG	CT	AC	CG	GT	CT	AA
24._RUQ_109	GG	AT	CG	GG	GG	GG	CC	_	AG	CC	CG	CC	_	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
1._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
2._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
3._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
4._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
5._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
6._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
7._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
8._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
9._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
10._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
11._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
12._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	_	AC	AT	CG	X_X	X_X
13._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
14._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
15._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	_	AC	AT	CG	X_X	X_X
16._RUQ_109	AA	_	-	CC	AA	CC	AC	CC	GT	CC	_	_	X_X	X_X
17._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
18._RUQ_109	AA	AG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
19._RUQ_109	_	_	_	_	AA	_	_	_	_	AC	_	_	X_X	X_X
20._GC-01-055-3-10	AA	GG	AA	CC	GG	CC	AA	CT	GG	AC	AA	GG	X_X	X_X
21._GC-01-055-3-10	AA	GG	AA	CC	GG	CC	AA	CT	GG	AC	AA	GG	X_X	X_X
22._EQX_/Z_[CHA]	AA	GG	AA	CC	GG	CC	AA	CT	GG	AC	AA	GG	X_X	X_X
23._EQX_/Z_[CHA]	AA	GG	AA	CC	GG	CC	AA	CT	GG	AC	AA	GG	X_X	X_X
24._RUQ_109	_	GG	AA	GG	AA	GG	AC	GG	AC	AC	AT	CG	X_X	X_X

Input profile: EQX_/Z_[CHA]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 3 > FP

Dapeng Zhang, 2016

1._EQX_/Z_[CHA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

3._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

4._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP1

5._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP4

6._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

7._EQX_/Z_[CHA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 10

Dapeng Zhang, 2016

8._EQX_/Z_[CHA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 14

Dapeng Zhang, 2016

9._EQX_/Z_[CHA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 15

Dapeng Zhang, 2016

10._EQX_/Z_[CHA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 13 > F

Dapeng Zhang, 2016

11._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

12._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

13._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

14._EQX_/Z_[CHA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 12 > F

Dapeng Zhang, 2016

15._EQX_/Z_[CHA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 7 > FP

Dapeng Zhang, 2016

16._EQX_/Z_[CHA] RUQ_109

97.8 %
23 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._EQX_/Z_[CHA]

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 Y9

Dapeng Zhang, 2016

18._EQX_/Z_[CHA] RUQ_109

96.2 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

19._EQX_/Z_[CHA] RUQ_109

92.3 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

20._EQX_/Z_[CHA] GC-01-055-3-10

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

21._EQX_/Z_[CHA] GC-01-055-3-10

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

22._EQX_/Z_[CHA]

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 8

Dapeng Zhang, 2016

23._EQX_/Z_[CHA]

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1310 9

Dapeng Zhang, 2016

24._EQX_/Z_[CHA] RUQ_109

48.6 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25